HappyDoc Generated Documentation .\MatchDomains

. / MatchDomains 

Functions   
  illustrate_backbone_alignment 
illustrate_backbone_alignment ()
  backbone_atom_pairs 
backbone_atom_pairs ( atoms )
  center_of_atoms 
center_of_atoms ( atoms )

In object coordinates. Assume they are all from same model.

  align_backbones_using_selected_atoms 
align_backbones_using_selected_atoms ()

Align two molecules using selected atoms. Two selected atoms are paired if one is from each molecule, they have the same chain idenitifier, residue number, residue name, and atom name, and the atom name is CA or P (ie. backbone only). Selected atoms which are not paired are not used in the alignment. The model with the higher model id number is moved to align it with the one with the lower id number. The RMSD and the rotation angle are printed to the reply log and status line.

  transform_square 
transform_square ( xform,  center )
  paired_alignment_atoms 
paired_alignment_atoms ( atoms )
  atom_molecules 
atom_molecules ( atoms )
  transform_schematic 
transform_schematic (
        xform,
        center,
        from_rgba,
        to_rgba,
        )

Create a surface model showing two squares, the second being the transformed version of the first. The first should pass through the center point. The two squares should have a common edge (rotation axis).

Classes   

This document was automatically generated Thu Feb 02 15:18:22 2006 by HappyDoc version 3.0.a1